Index A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W A action (PluginBlock attribute) actions (Plugin attribute) addBlock() (Plugin method) addBox() (MolstarAPI method), [1] addComponent() (MolstarAPI method), [1] addConfig() (Plugin method) addCSV() (SmilesAPI method), [1] addMolecule() (MolstarAPI method), [1] addPage() (Plugin method) addSmiles() (SmilesAPI method), [1] addSmilesWithData() (SmilesAPI method), [1] addSphere() (MolstarAPI method), [1] ANY (VariableTypes attribute), [1] ATOM (VariableTypes attribute), [1] atom_id (ColorTheme attribute) (MolecularSelection attribute) atom_index (MolecularSelection attribute) atom_name (MolecularSelection attribute) auth_atom_name (MolecularSelection attribute) auth_chain (MolecularSelection attribute) auth_chain_and_residue (MolecularSelection attribute) auth_residue (MolecularSelection attribute) auth_residue_range (MolecularSelection attribute) B BACKBONE (MolRepresentations attribute) BALL_AND_STICK (MolRepresentations attribute) blockLogs (PluginBlock attribute) blocks (Plugin property) BOOLEAN (VariableTypes attribute), [1] BOX (VariableTypes attribute), [1] C CARBOHYDRATE (MolRepresentations attribute) carbohydrate_symbol (ColorTheme attribute) cartoon (ColorTheme attribute) CARTOON (MolRepresentations attribute) category (PluginBlock attribute) cd() (PluginRemote method) chain (MolecularSelection attribute) CHAIN (VariableTypes attribute), [1] chain_and_residue (MolecularSelection attribute) chain_id (ColorTheme attribute) CHAIN_INTERACTIVE (VariableTypes attribute), [1] CHECKBOX (VariableTypes attribute), [1] CODE (VariableTypes attribute), [1] color (MolstarThemeOptions attribute) colorParams (MolstarThemeOptions attribute) ColorTheme (class in src.molstar) command() (PluginRemote method) config (Plugin property) (PluginBlock attribute) CONSTRAINED_NUMBER_RANGE (VariableTypes attribute), [1] copy() (PluginBlock method) CUSTOM (VariableTypes attribute), [1] D default (ColorTheme attribute) (Plugin attribute) (SizeTheme attribute) delete() (TempFile method) deleteTmpFolder() (TempFile method) description (PluginBlock attribute) dev (Plugin attribute) dir_name_exists_in_both_contexts() (in module src.utils) dirty (PluginBlock attribute) E element_index (ColorTheme attribute) element_symbol (ColorTheme attribute) (MolecularSelection attribute) ELLIPSOID (MolRepresentations attribute) entity (MolecularSelection attribute) entity_id (ColorTheme attribute) entity_source (ColorTheme attribute) error (PluginBlock attribute) Extensions (class in src.extensions) external_structure (ColorTheme attribute) external_volume (ColorTheme attribute) externalURL (PluginBlock attribute) extraData (PluginBlock attribute) F FILE (VariableTypes attribute), [1] FLOAT (VariableTypes attribute), [1] flow (PluginBlock attribute) focusResidue() (MolstarAPI method), [1] FOLDER (VariableTypes attribute), [1] formal_charge (ColorTheme attribute) G GAUSSIAN_SURFACE (MolRepresentations attribute) GAUSSIAN_VOLUME (MolRepresentations attribute) get_unique_dir_name() (in module src.utils) get_unique_path() (in module src.utils) getBlock() (Plugin method) getBlocks() (Plugin method) getData() (PluginRemote method) getPage() (Plugin method) getPages() (Plugin method) getTypes() (VariableTypes static method), [1] getUserFolder() (in module src.utils) H HETERORES (VariableTypes attribute), [1] host (PluginRemote property) hydrophobicity (ColorTheme attribute) I id (Plugin attribute) (PluginBlock attribute) illustrative (ColorTheme attribute) initPlugin() (in module src.utils) InputBlock (class in src) (class in src.plugins) inputs (PluginBlock property) insertion_code (MolecularSelection attribute) INTEGER (VariableTypes attribute), [1] isCustom (PluginBlock attribute) isLocal (PluginRemote property) J JMOL (SelectionLanguage attribute) L LABEL (MolRepresentations attribute) language (MolecularSelection attribute) LINE (MolRepresentations attribute) LIST (VariableTypes attribute), [1] loadCSV() (Extensions method) loadFile() (Extensions method) loadHTML() (Extensions method) loadImage() (Extensions method) loadPDF() (Extensions method) loadPlot() (Extensions method) loadPluginMeta() (Plugin method) loadText() (Extensions method) loadTrajectory() (MolstarAPI method), [1] logo (Plugin attribute) M model_config (MolecularSelection attribute) (MolstarThemeOptions attribute) model_index (ColorTheme attribute) module src.molstar src.smiles src.utils MOL_SCRIPT (SelectionLanguage attribute) MOLECULAR_SURFACE (MolRepresentations attribute) MolecularSelection (class in src.molstar) molecule_type (ColorTheme attribute) MolRepresentations (class in src.molstar) MolstarAPI (class in src.molstar), [1] MolstarThemeOptions (class in src.molstar) MolstarThemeOptions.Config (class in src.molstar) MULTIPLE_STRUCTURE (VariableTypes attribute), [1] multipleStructuresToFolder() (in module src.utils) N name (PluginBlock attribute) (PluginRemote property) NUMBER (VariableTypes attribute), [1] NUMBER_LIST (VariableTypes attribute), [1] NUMBER_RANGE (VariableTypes attribute), [1] O OBJECT (VariableTypes attribute), [1] occupancy (ColorTheme attribute) open() (Extensions method) operator_hkl (ColorTheme attribute) operator_name (ColorTheme attribute) ORIENTATION (MolRepresentations attribute) outputs (PluginBlock property) P pages (Plugin property) partial_charge (ColorTheme attribute) PASSWORD (VariableTypes attribute), [1] path_exists() (in module src.utils) path_exists_local() (in module src.utils) path_exists_remote() (in module src.utils) physical (SizeTheme attribute) PLANE (MolRepresentations attribute) Plugin (class in src.plugins) PluginBlock (class in src) (class in src.plugins) pluginDir (PluginBlock attribute) PluginEndpoint (class in src) pluginMeta (Plugin attribute) PluginPage (class in src) PluginRemote (class in src.plugins) PluginVariable (class in src) (class in src.plugins) POINT (MolRepresentations attribute) polymer_id (ColorTheme attribute) polymer_index (ColorTheme attribute) PUTTY (MolRepresentations attribute) PYMOL (SelectionLanguage attribute) R RADIO (VariableTypes attribute), [1] rawBlock (PluginBlock attribute) read() (TempFile method) remote (PluginBlock attribute) representation (MolstarThemeOptions attribute) representationParams (MolstarThemeOptions attribute) reset() (MolstarAPI method), [1] (SmilesAPI method), [1] ResetRemoteException residue (MolecularSelection attribute) RESIDUE (VariableTypes attribute), [1] residue_name (ColorTheme attribute) residue_range (MolecularSelection attribute) RESIDUE_RANGE (VariableTypes attribute), [1] S sanitizePath() (in module src.utils) script (MolecularSelection attribute) secondary_structure (ColorTheme attribute) (MolecularSelection attribute) selectedInputGroup (PluginBlock attribute) selectedRemote (PluginBlock attribute) SelectionLanguage (class in src.molstar) sendData() (PluginRemote method) sequence_id (ColorTheme attribute) setBackgroundColor() (MolstarAPI method), [1] setOutput() (PluginBlock method) setSpin() (MolstarAPI method), [1] shape_group (ColorTheme attribute) (SizeTheme attribute) SingletonMeta (class in src.utils) size (MolstarThemeOptions attribute) sizeParams (MolstarThemeOptions attribute) SizeTheme (class in src.molstar) SlurmBlock (class in src) (class in src.plugins) SMILES (VariableTypes attribute), [1] SmilesAPI (class in src.smiles), [1] SPACEFILL (MolRepresentations attribute) SPHERE (VariableTypes attribute), [1] src.molstar module src.smiles module src.utils module STDRES (VariableTypes attribute), [1] storeExtensionResults() (Extensions method) STRING (VariableTypes attribute), [1] STRING_LIST (VariableTypes attribute), [1] STRUCTURE (VariableTypes attribute), [1] structure_index (ColorTheme attribute) structureToFile() (in module src.utils) submitJob() (PluginRemote method) T TempFile (class in src.utils) TEXT_AREA (VariableTypes attribute), [1] time (PluginBlock attribute) trajectory_index (ColorTheme attribute) type (MolecularSelection attribute) TYPE (PluginBlock attribute) U uncertainty (ColorTheme attribute) (SizeTheme attribute) uniform (ColorTheme attribute) (SizeTheme attribute) unique_block_dir_local (PluginBlock property) unique_block_dir_remote (PluginBlock property) unit_index (ColorTheme attribute) use_enum_values (MolstarThemeOptions.Config attribute) userHome (PluginRemote property) V VariableGroup (class in src) (class in src.plugins) VariableList (class in src) variables (PluginBlock property) VariableTypes (class in src) (class in src.plugins) views (Plugin attribute) VMD (SelectionLanguage attribute) volume_segment (ColorTheme attribute) volume_value (ColorTheme attribute) (SizeTheme attribute) W within_distance (MolecularSelection attribute) workDir (PluginRemote property) write() (TempFile method)